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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
7
ChIP-seq
3
Hi-C
3
STARR-seq
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
7
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
23
August, 2021
2
March, 2019
Available data
10
tsv
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
25
Homo sapiens
Biosample type
21
cell line
4
tissue
Organ
20
liver
4
pancreas
kidney
Project
25
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3273
AMP-T2D consortium
331
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
25
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
kidney
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
25 results
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total RNA-seq
ChIP-seq
Hi-C
STARR-seq
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
7
1
2
1
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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