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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
STARR-seq
1
ATAC-seq
1
Hi-C
1
total RNA-seq
Assay category
1
3D chromatin structure
1
DNA accessibility
1
Transcription
Date released
5
August, 2021
1
March, 2019
Available data
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
6
Homo sapiens
Biosample type
3
cell line
3
tissue
Organ
liver
3
pancreas
2
kidney
Project
6
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
3192
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
6
Bing Ren, UCSD
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
liver
files.file_type!
bedpe
BIOSAMPLE
ASSAY
6 results
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STARR-seq
ATAC-seq
Hi-C
total RNA-seq
cell line
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
1
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