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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
3
STARR-seq
2
Hi-C
1
ATAC-seq
1
total RNA-seq
Assay category
48
Transcription
2
3D chromatin structure
1
DNA accessibility
Date released
47
September, 2023
5
August, 2021
2
March, 2019
Available data
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
54
Homo sapiens
Biosample type
51
tissue
3
cell line
Organ
49
kidney
liver
4
pancreas
Project
47
KPMP
7
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
3192
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
54 results
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single cell RNA-seq
STARR-seq
Hi-C
ATAC-seq
total RNA-seq
tissue
kidney
47
islet of Langerhans
2
1
1
cell line
HEK293T
2
Synthesized DNA
1
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