Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
11
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
29
August, 2021
2
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
31
Homo sapiens
Biosample type
27
cell line
4
tissue
Organ
24
liver
4
pancreas
2
kidney
Project
31
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
2742
AMP-T2D consortium
324
Klaus Kaestner, Upenn
201
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
control
BIOSAMPLE
ASSAY
31 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
11
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
Download