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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
15
DNA binding
10
Transcription
3
3D chromatin structure
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
1
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
34
Homo sapiens
Biosample type
31
cell line
3
tissue
Organ
28
liver
3
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
13
hg19
Lab
2505
AMP-T2D consortium
227
Klaus Kaestner, Upenn
157
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
15
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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