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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
total RNA-seq
11
ATAC-seq
11
single cell RNA-seq
6
snATAC-seq
1
Hi-C
Assay category
80
Transcription
17
DNA accessibility
1
3D chromatin structure
Date released
64
August, 2021
20
May, 2022
14
May, 2023
Available data
bed narrowPeak
64
xls
57
txt
20
bigWig
1
hic
Organism
98
Homo sapiens
Biosample type
98
tissue
Organ
78
kidney
20
liver
Project
98
AMP
Genome assembly (visualization)
11
GRCh38
1
hg19
Lab
2369
AMP-T2D consortium
324
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
files.file_type!
bed narrowPeak
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
Hi-C
tissue
kidney
49
11
11
6
1
liver
20
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