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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
ATAC-seq
24
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
Transcription
154
DNA binding
133
DNA accessibility
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
71
August, 2021
18
February, 2023
18
May, 2022
16
January, 2021
11
May, 2023
Available data
196
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
64
xls
18
fastq
1
hic
Organism
310
Homo sapiens
Biosample type
141
primary cell
122
tissue
42
in vitro differentiated cells
5
cell line
Organ
82
kidney
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
175
AMP
135
T1D
Genome assembly (visualization)
159
GRCh38
141
hg19
Lab
2436
AMP-T2D consortium
228
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
BIOSAMPLE
ASSAY
310 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
kidney
75
6
1
islet of Langerhans
29
6
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
cell line
EndoC_BH1
3
2
See all biosamples
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