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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
997
total RNA-seq
865
ChIP-seq
205
ATAC-seq
177
DNase-seq
124
single cell RNA-seq
27
WGBS
22
pCHi-C
16
small RNA-seq
14
Hi-C
11
RRBS
8
snATAC-seq
4
FAIRE-seq
3
RNA microarray
3
snDrop-seq
Assay category
1137
Transcription
865
DNA binding
394
DNA accessibility
38
DNA methylation
14
3D chromatin structure
Target of assay
591
histone modification
590
histone
307
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
461
February, 2021
284
August, 2017
240
October, 2019
227
August, 2021
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
39
November, 2019
38
March, 2020
38
May, 2021
26
November, 2018
24
February, 2020
22
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
Available data
1878
bam
1708
bigWig
1072
tsv
902
bed narrowPeak
560
bigBed narrowPeak
351
fastq
238
tagAlign
210
bed broadPeak
204
bed bed3+
175
bigBed broadPeak
67
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2468
Homo sapiens
Biosample type
2476
tissue
530
cell line
475
primary cell
226
in vitro differentiated cells
7
stem cell
Organ
546
connective tissue
487
adipose tissue
442
pancreas
321
liver
273
heart
262
brain
252
kidney
133
blood vessel
133
vasculature
121
limb
81
musculature of body
74
bone element
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
thymus
Project
2472
AMP
4
T1D
Genome assembly (visualization)
1812
GRCh38
1709
hg19
Lab
2334
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
2476 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
snATAC-seq
FAIRE-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
280
71
34
1
6
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
kidney
49
27
75
13
17
1
1
6
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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