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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
61
total RNA-seq
16
snATAC-seq
11
single cell RNA-seq
1
Hi-C
1
pCHi-C
Assay category
120
DNA accessibility
72
Transcription
1
3D chromatin structure
Date released
128
August, 2021
24
May, 2022
18
February, 2023
14
May, 2023
8
January, 2021
2
May, 2021
Available data
82
bed narrowPeak
64
xls
63
txt
24
bam
24
fastq
1
hic
Organism
194
Homo sapiens
Biosample type
239
primary cell
194
tissue
47
in vitro differentiated cells
5
cell line
Organ
142
kidney
51
pancreas
1
thymus
Project
167
AMP
27
T1D
Genome assembly (visualization)
75
GRCh38
19
hg19
Lab
2425
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
194 results
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ATAC-seq
total RNA-seq
snATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
kidney
75
49
6
11
1
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
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