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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
11
single cell RNA-seq
6
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
64
Transcription
6
DNA accessibility
1
3D chromatin structure
Date released
64
August, 2021
4
March, 2023
3
May, 2023
Available data
57
txt
1
hic
Organism
67
Homo sapiens
Biosample type
67
tissue
2
cell line
2
stem cell
Organ
67
kidney
Project
67
AMP
4
community
Genome assembly (visualization)
GRCh38
1
hg19
Lab
1094
AMP-T2D consortium
314
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
assembly!
GRCh38
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
49
11
6
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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