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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
18
ChIP-seq
11
single cell RNA-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
DNA accessibility
70
Transcription
18
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
94
August, 2021
3
May, 2023
1
March, 2019
Available data
57
txt
14
bed narrowPeak
14
bigWig
10
tsv
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
98
Homo sapiens
Biosample type
64
tissue
34
cell line
Organ
63
kidney
31
liver
3
pancreas
Project
98
AMP
Genome assembly (visualization)
17
hg19
Lab
3350
AMP-T2D consortium
291
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
49
11
1
islet of Langerhans
1
2
cell line
HepG2
9
18
2
1
1
HEK293T
2
Synthesized DNA
1
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