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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
124
ATAC-seq
96
single cell RNA-seq
54
snATAC-seq
47
WGBS
4
Hi-C
Assay category
178
DNA accessibility
96
Transcription
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
79
August, 2021
45
February, 2021
43
September, 2020
14
May, 2023
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
77
fastq
64
bed narrowPeak
64
xls
10
bigWig
8
txt
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
325
Homo sapiens
Biosample type
232
primary cell
93
tissue
Organ
99
epithelium
99
pancreas
93
kidney
Project
232
HPAP
93
AMP
Genome assembly (visualization)
85
GRCh38
4
hg19
Lab
2671
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
total RNA-seq
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
kidney
75
11
6
1
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