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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
total RNA-seq
96
single cell RNA-seq
60
ATAC-seq
54
snATAC-seq
47
WGBS
Assay category
237
Transcription
114
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
76
February, 2023
63
August, 2021
59
September, 2020
45
February, 2021
14
May, 2023
7
August, 2020
Available data
169
fastq
153
zippedFastqFolder
bed narrowPeak
64
xls
57
txt
10
bigWig
6
tsv
Organism
398
Homo sapiens
Biosample type
321
primary cell
77
tissue
Organ
149
epithelium
149
pancreas
77
kidney
Project
321
HPAP
77
AMP
Genome assembly (visualization)
21
GRCh38
hg19
Lab
872
AMP-T2D consortium
321
Klaus Kaestner, Upenn
105
Kyle Gaulton, UCSD
77
Katalin Susztak, Upenn
47
KPMP
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
files.file_type!
bed narrowPeak
assembly!
hg19
BIOSAMPLE
ASSAY
398 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
tissue
kidney
49
11
11
6
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