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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ATAC-seq
70
ChIP-seq
63
total RNA-seq
11
single cell RNA-seq
6
snATAC-seq
1
Hi-C
Assay category
104
DNA accessibility
74
Transcription
70
DNA binding
1
3D chromatin structure
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
128
August, 2021
83
May, 2021
24
May, 2022
14
May, 2023
Available data
112
bed narrowPeak
64
xls
63
txt
40
bigWig
24
bam
24
fastq
2
bed bed3+
1
hic
Organism
249
Homo sapiens
Biosample type
167
tissue
47
in vitro differentiated cells
35
primary cell
Organ
142
kidney
25
pancreas
Project
249
AMP
T1D
Genome assembly (visualization)
75
GRCh38
59
hg19
Lab
3904
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
107
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
award.project!
T1D
BIOSAMPLE
ASSAY
249 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
tissue
kidney
75
49
11
6
1
islet of Langerhans
18
6
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
37
5
primary cell
CD8-positive, alpha-beta T cell
33
2
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