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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ATAC-seq
66
total RNA-seq
37
ChIP-seq
16
snATAC-seq
11
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
1
pCHi-C
Assay category
125
DNA accessibility
77
Transcription
37
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
128
August, 2021
49
May, 2021
24
May, 2022
23
February, 2023
14
May, 2023
8
January, 2021
Available data
82
bed narrowPeak
64
xls
63
txt
24
bam
24
fastq
5
bigWig
1
hic
Organism
246
Homo sapiens
Biosample type
primary cell
194
tissue
47
in vitro differentiated cells
5
cell line
Organ
142
kidney
51
pancreas
1
thymus
Project
214
AMP
32
T1D
Genome assembly (visualization)
75
GRCh38
24
hg19
Lab
3388
AMP-T2D consortium
142
Katalin Susztak, Upenn
104
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
biosample_type!
primary cell
BIOSAMPLE
ASSAY
246 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
pCHi-C
tissue
kidney
75
49
6
11
1
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
37
cell line
EndoC_BH1
3
2
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