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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
40
ChIP-seq
27
ATAC-seq
24
snATAC-seq
17
pCHi-C
11
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
175
Transcription
51
DNA accessibility
40
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
121
May, 2021
64
August, 2021
45
May, 2020
23
February, 2023
16
January, 2021
14
May, 2023
6
May, 2022
Available data
220
bigWig
204
bam
bed narrowPeak
96
tsv
84
tagAlign
64
xls
63
txt
24
fastq
2
bed bed3+
1
hic
Organism
289
Homo sapiens
Biosample type
125
primary cell
112
tissue
47
in vitro differentiated cells
5
cell line
Organ
78
kidney
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
137
AMP
Genome assembly (visualization)
107
GRCh38
107
hg19
Lab
2369
AMP-T2D consortium
324
Klaus Kaestner, Upenn
211
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
289 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
kidney
49
11
6
11
1
islet of Langerhans
11
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
5
cell line
EndoC_BH1
3
2
See all biosamples
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