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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
117
ChIP-seq
85
single cell RNA-seq
49
ATAC-seq
47
WGBS
29
snATAC-seq
16
pCHi-C
Assay category
275
Transcription
117
DNA binding
78
DNA accessibility
47
DNA methylation
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
186
May, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
May, 2020
18
February, 2021
8
January, 2021
7
August, 2020
Available data
225
bigWig
180
bam
153
zippedFastqFolder
142
fastq
114
bed narrowPeak
102
tsv
84
tagAlign
2
bed bed3+
Organism
533
Homo sapiens
Biosample type
533
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
149
epithelium
149
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
294
HPAP
204
T1D
35
AMP
Genome assembly (visualization)
215
hg19
190
GRCh38
Lab
523
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
5
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
533 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
primary cell
monocyte
53
84
1
Langerhans cell
85
21
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive regulatory T cell
2
regulatory T cell
2
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
erythroblast
1
immature natural killer cell
1
inflammatory macrophage
1
macrophage
1
megakaryocyte
1
myeloid dendritic cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell
1
neutrophil
1
plasma cell
1
plasmacytoid dendritic cell
1
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