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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
ATAC-seq
48
snATAC-seq
3
Hi-C
Assay category
177
Transcription
48
DNA accessibility
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
56
September, 2020
54
May, 2022
39
February, 2021
3
October, 2022
Available data
153
fastq
73
zippedFastqFolder
3
bedpe bed3+
3
cool
3
hic
Organism
228
Homo sapiens
Biosample type
228
primary cell
Organ
56
epithelium
56
pancreas
Project
228
HPAP
Genome assembly (visualization)
3
hg19
Lab
3519
AMP-T2D consortium
309
Kyle Gaulton, UCSD
228
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
30
audit script error
assay_slims!
DNA methylation
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
1
exocrine cell
39
pancreatic beta cell
11
1
pancreatic acinar cell
1
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