Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
snATAC-seq
3
Hi-C
Assay category
177
Transcription
49
DNA accessibility
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
72
May, 2022
59
September, 2020
12
February, 2021
7
August, 2020
3
October, 2022
Available data
136
fastq
91
zippedFastqFolder
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
229
Homo sapiens
Biosample type
229
primary cell
Organ
105
epithelium
105
pancreas
Project
229
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3860
AMP-T2D consortium
325
Kyle Gaulton, UCSD
229
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
assay_slims!
DNA methylation
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
229 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
pancreatic alpha cell
42
29
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
4
1
Download