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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
Assay category
177
Transcription
97
DNA accessibility
DNA methylation
Date released
93
May, 2022
76
February, 2023
59
September, 2020
39
February, 2021
7
August, 2020
Available data
163
fastq
112
zippedFastqFolder
10
bigWig
bedpe bed3+
3
cool
3
hic
Organism
274
Homo sapiens
Biosample type
274
primary cell
Organ
102
epithelium
102
pancreas
Project
274
HPAP
Genome assembly (visualization)
10
GRCh38
Lab
3844
AMP-T2D consortium
343
Kyle Gaulton, UCSD
274
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
36
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_slims!
DNA methylation
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
274 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
exocrine cell
39
pancreatic beta cell
11
16
pancreatic acinar cell
4
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