Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
49
ATAC-seq
48
snATAC-seq
3
Hi-C
Assay category
97
DNA accessibility
85
Transcription
DNA methylation
3
3D chromatin structure
Date released
93
May, 2022
43
September, 2020
39
February, 2021
7
August, 2020
3
October, 2022
Available data
112
zippedFastqFolder
71
fastq
10
bigWig
3
bedpe bed3+
3
cool
3
hic
Organism
185
Homo sapiens
Biosample type
185
primary cell
Organ
52
epithelium
52
pancreas
Project
185
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2615
AMP-T2D consortium
228
Kyle Gaulton, UCSD
185
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
47
KPMP
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
assay_title!
total RNA-seq
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
185 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
1
pancreatic beta cell
16
1
pancreatic acinar cell
4
1
Download