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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
41
WGBS
39
ATAC-seq
3
Hi-C
Assay category
87
DNA accessibility
85
Transcription
41
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
40
September, 2020
39
February, 2021
3
October, 2022
Available data
153
zippedFastqFolder
67
fastq
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
216
Homo sapiens
Biosample type
216
primary cell
Organ
83
epithelium
83
pancreas
Project
216
HPAP
Genome assembly (visualization)
GRCh38
3
hg19
Lab
879
AMP-T2D consortium
216
Klaus Kaestner, Upenn
144
Kyle Gaulton, UCSD
47
KPMP
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
18
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
assay_title!
total RNA-seq
assembly!
GRCh38
files.file_type!
tsv
BIOSAMPLE
ASSAY
216 results
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single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
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