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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
154
ChIP-seq
85
single cell RNA-seq
83
ATAC-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
154
DNA binding
149
DNA accessibility
85
Transcription
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
176
May, 2021
152
May, 2022
45
February, 2021
43
September, 2020
18
February, 2023
16
January, 2021
7
August, 2020
3
October, 2022
Available data
153
zippedFastqFolder
132
bed narrowPeak
132
bigWig
102
bam
95
fastq
84
tagAlign
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
460
Homo sapiens
Biosample type
373
primary cell
42
in vitro differentiated cells
40
tissue
5
cell line
Organ
138
pancreas
99
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
232
HPAP
135
T1D
93
AMP
Genome assembly (visualization)
143
hg19
94
GRCh38
Lab
2665
AMP-T2D consortium
232
Klaus Kaestner, Upenn
228
Kyle Gaulton, UCSD
93
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
460 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
monocyte
84
1
pancreatic alpha cell
29
31
1
CD8-positive, alpha-beta T cell
33
1
pancreatic beta cell
16
16
1
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in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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