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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
total RNA-seq
96
single cell RNA-seq
54
snATAC-seq
47
WGBS
39
ATAC-seq
4
Hi-C
Assay category
237
Transcription
93
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
64
August, 2021
56
September, 2020
45
February, 2021
3
May, 2023
3
October, 2022
Available data
159
fastq
153
zippedFastqFolder
57
txt
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
381
Homo sapiens
Biosample type
314
primary cell
67
tissue
Organ
142
epithelium
142
pancreas
67
kidney
Project
314
HPAP
67
AMP
Genome assembly (visualization)
GRCh38
4
hg19
Lab
1094
AMP-T2D consortium
314
Klaus Kaestner, Upenn
163
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
30
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
381 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
22
1
pancreatic beta cell
11
16
13
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
49
11
6
1
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