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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ATAC-seq
62
single cell RNA-seq
49
total RNA-seq
41
WGBS
27
snATAC-seq
4
Hi-C
Assay category
141
DNA accessibility
111
Transcription
41
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
128
August, 2021
18
September, 2020
14
May, 2023
3
October, 2022
Available data
fastq
153
zippedFastqFolder
64
bed narrowPeak
64
xls
57
txt
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
297
Homo sapiens
Biosample type
155
primary cell
142
tissue
Organ
142
kidney
83
epithelium
83
pancreas
Project
155
HPAP
142
AMP
Genome assembly (visualization)
75
GRCh38
4
hg19
Lab
2749
AMP-T2D consortium
319
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
3
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files.file_type!
fastq
BIOSAMPLE
ASSAY
297 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
tissue
kidney
75
11
49
6
1
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