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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
34
single cell RNA-seq
28
ATAC-seq
27
snATAC-seq
Assay category
132
Transcription
55
DNA accessibility
DNA methylation
Date released
76
February, 2023
41
September, 2020
39
February, 2021
24
May, 2022
7
August, 2020
Available data
230
bigWig
204
bam
187
fastq
132
bed narrowPeak
112
zippedFastqFolder
96
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
187
Homo sapiens
Biosample type
163
primary cell
24
tissue
Organ
87
pancreas
63
epithelium
Project
163
HPAP
24
AMP
Genome assembly (visualization)
18
hg19
10
GRCh38
Lab
1148
AMP-T2D consortium
163
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
187 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
exocrine cell
39
pancreatic beta cell
11
3
tissue
islet of Langerhans
6
18
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