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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
34
single cell RNA-seq
27
snATAC-seq
10
ATAC-seq
6
WGBS
3
Hi-C
Assay category
126
Transcription
37
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
41
September, 2020
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
172
Homo sapiens
Biosample type
172
primary cell
Organ
72
epithelium
72
pancreas
Project
172
HPAP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
1180
AMP-T2D consortium
172
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
30
audit script error
BIOSAMPLE
ASSAY
172 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
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