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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
total RNA-seq
85
single cell RNA-seq
69
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
197
Transcription
117
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
174
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
30
bigWig
20
bed narrowPeak
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
364
Homo sapiens
Biosample type
324
primary cell
40
tissue
Organ
152
epithelium
152
pancreas
40
liver
Project
324
HPAP
40
AMP
Genome assembly (visualization)
23
hg19
10
GRCh38
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
364 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
liver
20
20
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