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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
single cell RNA-seq
92
total RNA-seq
49
ATAC-seq
48
snATAC-seq
47
WGBS
10
MeRIP-seq
3
Hi-C
Assay category
224
Transcription
97
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
134
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
10
November, 2020
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
381
Homo sapiens
Biosample type
324
primary cell
51
tissue
6
cell line
Organ
162
pancreas
158
epithelium
47
kidney
Project
324
HPAP
47
KPMP
10
AMP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
6
inconsistent ontology term
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
381 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
MeRIP-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
47
islet of Langerhans
4
cell line
EndoC_BH1
6
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