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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
33
single cell RNA-seq
27
snATAC-seq
10
ATAC-seq
6
WGBS
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
129
Transcription
37
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
76
February, 2023
45
February, 2021
40
September, 2020
7
August, 2020
4
March, 2023
3
October, 2022
Available data
169
fastq
zippedFastqFolder
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
171
Homo sapiens
Biosample type
171
primary cell
2
cell line
2
stem cell
Organ
72
epithelium
72
pancreas
Project
171
HPAP
4
community
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
27
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
pancreatic acinar cell
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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