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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
73
single cell RNA-seq
50
ATAC-seq
41
WGBS
21
snATAC-seq
18
ChIP-seq
6
Hi-C
5
STARR-seq
whole genome sequencing assay
Assay category
175
Transcription
71
DNA accessibility
41
DNA methylation
18
DNA binding
6
3D chromatin structure
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
134
May, 2022
76
February, 2023
59
September, 2020
February, 2021
35
August, 2021
7
August, 2020
3
October, 2022
2
March, 2019
Available data
153
zippedFastqFolder
124
fastq
24
bigWig
14
bed narrowPeak
10
tsv
5
bedpe bed3+
5
hic
3
cool
1
bedpe
Organism
316
Homo sapiens
Biosample type
279
primary cell
33
cell line
4
tissue
Organ
150
pancreas
146
epithelium
30
liver
2
kidney
Project
279
HPAP
37
AMP
Genome assembly (visualization)
20
hg19
11
GRCh38
Lab
3242
AMP-T2D consortium
343
Kyle Gaulton, UCSD
279
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
February, 2021
BIOSAMPLE
ASSAY
316 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
ChIP-seq
Hi-C
STARR-seq
primary cell
pancreatic alpha cell
42
29
25
1
Langerhans cell
73
21
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
cell line
HepG2
9
18
1
2
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
2
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