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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
total RNA-seq
48
snATAC-seq
47
ATAC-seq
47
WGBS
45
single cell RNA-seq
18
ChIP-seq
6
Hi-C
5
STARR-seq
whole genome sequencing assay
Assay category
131
Transcription
95
DNA accessibility
47
DNA methylation
18
DNA binding
6
3D chromatin structure
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
134
May, 2022
76
February, 2023
September, 2020
45
February, 2021
35
August, 2021
7
August, 2020
3
October, 2022
2
March, 2019
Available data
134
zippedFastqFolder
128
fastq
21
bigWig
16
tsv
14
bed narrowPeak
5
bedpe bed3+
5
hic
3
cool
1
bedpe
Organism
302
Homo sapiens
Biosample type
265
primary cell
33
cell line
4
tissue
Organ
137
pancreas
133
epithelium
30
liver
2
kidney
Project
265
HPAP
37
AMP
Genome assembly (visualization)
20
hg19
8
GRCh38
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
265
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
September, 2020
BIOSAMPLE
ASSAY
302 results
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total RNA-seq
snATAC-seq
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
Hi-C
STARR-seq
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
27
31
1
pancreatic beta cell
10
15
16
1
exocrine cell
39
pancreatic acinar cell
4
1
cell line
HepG2
9
18
1
2
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
2
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