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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
total RNA-seq
125
ATAC-seq
96
single cell RNA-seq
54
snATAC-seq
47
WGBS
18
ChIP-seq
7
Hi-C
5
STARR-seq
1
whole genome sequencing assay
Assay category
247
Transcription
179
DNA accessibility
47
DNA methylation
18
DNA binding
7
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
164
August, 2021
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
14
May, 2023
7
August, 2020
3
October, 2022
2
March, 2019
Available data
169
fastq
153
zippedFastqFolder
78
bed narrowPeak
64
xls
57
txt
24
bigWig
16
tsv
6
hic
5
bedpe bed3+
3
cool
1
bedpe
1
vcf
Organism
504
Homo sapiens
Biosample type
324
primary cell
146
tissue
34
cell line
Organ
156
pancreas
152
epithelium
144
kidney
31
liver
Project
324
HPAP
180
AMP
Genome assembly (visualization)
86
GRCh38
21
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
504 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
STARR-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
49
75
11
6
1
islet of Langerhans
1
1
2
cell line
HepG2
9
18
1
2
1
HEK293T
2
Synthesized DNA
1
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