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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
154
ChIP-seq
85
single cell RNA-seq
83
ATAC-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
HiChIP
Assay category
207
Transcription
Date released
81
February, 2023
59
May, 2021
45
May, 2020
16
September, 2020
6
May, 2022
Available data
102
bam
98
bigWig
98
fastq
96
tsv
6
txt
2
bed bed3+
Organism
207
Homo sapiens
Biosample type
190
primary cell
12
tissue
5
in vitro differentiated cells
Organ
65
pancreas
53
epithelium
Project
101
T1D
92
HPAP
14
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
1247
AMP-T2D consortium
115
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
assay_title!
HiChIP
BIOSAMPLE
ASSAY
207 results
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Clear Filters
total RNA-seq
primary cell
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
CD8-positive, alpha-beta T cell
4
+ See 23 more…
tissue
islet of Langerhans
11
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
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