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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
154
ChIP-seq
single cell RNA-seq
83
ATAC-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
3
Hi-C
Assay category
207
Transcription
154
DNA binding
149
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
125
May, 2022
94
February, 2023
45
May, 2020
33
February, 2021
19
September, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
230
bigWig
204
bam
159
fastq
132
bed narrowPeak
102
tsv
101
zippedFastqFolder
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
577
Homo sapiens
Biosample type
478
primary cell
52
tissue
47
in vitro differentiated cells
cell line
Organ
203
pancreas
152
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
239
HPAP
231
T1D
107
AMP
Genome assembly (visualization)
241
hg19
190
GRCh38
Lab
3086
AMP-T2D consortium
338
Kyle Gaulton, UCSD
239
Klaus Kaestner, Upenn
131
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
577 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
53
84
1
pancreatic alpha cell
42
29
31
1
Langerhans cell
48
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
5
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