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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
85
single cell RNA-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
37
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
194
Transcription
126
DNA accessibility
47
DNA methylation
37
DNA binding
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
140
May, 2022
99
February, 2023
60
May, 2021
59
September, 2020
45
February, 2021
16
January, 2021
7
August, 2020
Available data
175
fastq
153
zippedFastqFolder
10
bigWig
6
bam
6
tsv
6
txt
Organism
426
Homo sapiens
Biosample type
345
primary cell
42
in vitro differentiated cells
34
tissue
5
cell line
Organ
182
pancreas
149
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
321
HPAP
56
T1D
49
AMP
Genome assembly (visualization)
hg19
190
GRCh38
Lab
987
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
105
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
1
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
426 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 16 more…
in vitro differentiated cells
embryonic stem cell
5
37
tissue
islet of Langerhans
11
6
11
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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