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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
60
ATAC-seq
47
WGBS
39
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
278
Transcription
99
DNA accessibility
84
DNA binding
47
DNA methylation
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
45
May, 2020
18
February, 2021
16
January, 2021
7
August, 2020
Available data
190
bigWig
180
bam
153
zippedFastqFolder
142
fastq
102
tsv
84
bed narrowPeak
84
tagAlign
Organism
530
Homo sapiens
Biosample type
498
primary cell
27
tissue
5
cell line
Organ
175
pancreas
149
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
294
HPAP
236
T1D
AMP
Genome assembly (visualization)
190
GRCh38
180
hg19
Lab
294
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
5
inconsistent ontology term
audit.ERROR.category!
audit script error
award.project!
AMP
BIOSAMPLE
ASSAY
530 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
85
21
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
5
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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