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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
total RNA-seq
85
single cell RNA-seq
78
ATAC-seq
66
snATAC-seq
47
WGBS
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
233
Transcription
144
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
May, 2021
158
May, 2022
99
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
193
fastq
153
zippedFastqFolder
69
bam
55
bigWig
51
tsv
18
bed narrowPeak
6
txt
3
bedpe bed3+
3
cool
3
hic
Organism
432
Homo sapiens
Biosample type
377
primary cell
50
tissue
5
cell line
Organ
202
pancreas
152
epithelium
8
blood
8
bodily fluid
Project
324
HPAP
84
T1D
24
AMP
Genome assembly (visualization)
66
hg19
55
GRCh38
Lab
3748
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
4
inconsistent ontology term
month_released!
May, 2021
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
peripheral blood mononuclear cell
8
+ See 26 more…
tissue
islet of Langerhans
11
29
6
pancreas
4
cell line
EndoC_BH1
3
2
See all biosamples
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