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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
154
ChIP-seq
85
single cell RNA-seq
56
snATAC-seq
47
ATAC-seq
47
WGBS
16
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
280
Transcription
154
DNA binding
103
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
233
May, 2021
134
May, 2022
81
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
8
January, 2021
August, 2020
3
October, 2022
Available data
223
bigWig
180
bam
162
fastq
153
zippedFastqFolder
114
bed narrowPeak
102
tsv
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
608
Homo sapiens
Biosample type
556
primary cell
tissue
47
in vitro differentiated cells
5
cell line
Organ
145
epithelium
145
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
317
HPAP
209
T1D
82
AMP
Genome assembly (visualization)
223
hg19
183
GRCh38
Lab
1487
AMP-T2D consortium
317
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
6
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
month_released!
August, 2020
biosample_type!
tissue
BIOSAMPLE
ASSAY
608 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
24
31
1
pancreatic beta cell
11
14
16
1
exocrine cell
39
+ See 36 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
cell line
EndoC_BH1
3
2
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