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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
142
total RNA-seq
85
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
5
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
227
Transcription
154
DNA binding
61
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
234
May, 2021
54
May, 2022
45
May, 2020
44
February, 2023
40
September, 2020
39
February, 2021
8
January, 2021
Available data
220
bigWig
180
bam
114
bed narrowPeak
100
fastq
96
tsv
84
tagAlign
73
zippedFastqFolder
2
bed bed3+
Organism
464
Homo sapiens
Biosample type
411
primary cell
47
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
152
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
210
T1D
172
HPAP
82
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
3187
AMP-T2D consortium
292
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
27
audit script error
5
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
464 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
Langerhans cell
85
48
exocrine cell
39
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
+ See 33 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
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