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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ATAC-seq
65
total RNA-seq
47
WGBS
10
snATAC-seq
Assay category
88
DNA accessibility
65
Transcription
47
DNA methylation
3D chromatin structure
Date released
104
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
1
May, 2021
Available data
93
fastq
80
zippedFastqFolder
24
bam
18
bed narrowPeak
10
bigWig
6
tsv
6
txt
Organism
200
Homo sapiens
Biosample type
149
primary cell
51
tissue
Organ
200
pancreas
149
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
149
HPAP
26
T1D
25
AMP
Genome assembly (visualization)
18
hg19
10
GRCh38
Lab
721
AMP-T2D consortium
149
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
200 results
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ATAC-seq
total RNA-seq
WGBS
snATAC-seq
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
tissue
islet of Langerhans
29
11
6
pancreas
1
4
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