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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ATAC-seq
65
total RNA-seq
47
WGBS
10
snATAC-seq
3
Hi-C
Assay category
81
DNA accessibility
65
Transcription
47
DNA methylation
3
3D chromatin structure
Date released
104
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
August, 2020
6
February, 2021
3
October, 2022
1
May, 2021
Available data
86
fastq
80
zippedFastqFolder
24
bam
18
bed narrowPeak
6
tsv
6
txt
3
bedpe bed3+
3
bigWig
3
cool
3
hic
Organism
196
Homo sapiens
Biosample type
145
primary cell
51
tissue
Organ
196
pancreas
145
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
145
HPAP
26
T1D
25
AMP
Genome assembly (visualization)
21
hg19
3
GRCh38
Lab
725
AMP-T2D consortium
145
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
3
audit script error
month_released!
August, 2020
BIOSAMPLE
ASSAY
196 results
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ATAC-seq
total RNA-seq
WGBS
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
24
42
31
1
pancreatic beta cell
14
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
29
11
6
pancreas
1
4
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