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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
146
ChIP-seq
85
single cell RNA-seq
83
ATAC-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
292
Transcription
149
DNA accessibility
146
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
control
5
RNA binding protein
Date released
227
May, 2021
158
May, 2022
99
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
227
bigWig
204
bam
193
fastq
153
zippedFastqFolder
132
bed narrowPeak
102
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
659
Homo sapiens
Biosample type
560
primary cell
52
tissue
42
in vitro differentiated cells
5
cell line
Organ
203
pancreas
152
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
324
HPAP
236
T1D
99
AMP
Genome assembly (visualization)
238
hg19
190
GRCh38
Lab
3586
AMP-T2D consortium
335
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
5
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
659 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
32
5
cell line
EndoC_BH1
3
2
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