Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
48
snATAC-seq
47
ATAC-seq
47
WGBS
45
single cell RNA-seq
3
Hi-C
Assay category
121
Transcription
95
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
1
October, 2017
Available data
134
zippedFastqFolder
129
fastq
8
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
1
bed broadPeak
Organism
266
Homo sapiens
Biosample type
265
primary cell
1
tissue
Organ
134
pancreas
133
epithelium
Project
265
HPAP
1
AMP
Genome assembly (visualization)
8
GRCh38
4
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
265
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
September, 2020
BIOSAMPLE
ASSAY
266 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
single cell RNA-seq
Hi-C
primary cell
Langerhans cell
48
45
pancreatic alpha cell
27
27
31
1
pancreatic beta cell
10
15
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
islet of Langerhans
1
Download