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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
27
snATAC-seq
12
single cell RNA-seq
7
ATAC-seq
6
WGBS
3
Hi-C
Assay category
88
Transcription
34
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Date released
May, 2022
76
February, 2023
September, 2020
45
February, 2021
7
August, 2020
3
October, 2022
Available data
128
fastq
7
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
131
Homo sapiens
Biosample type
131
primary cell
Organ
53
epithelium
53
pancreas
Project
131
HPAP
Genome assembly (visualization)
7
GRCh38
3
hg19
Lab
3910
AMP-T2D consortium
319
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
131
Klaus Kaestner, Upenn
47
KPMP
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
May, 2022
September, 2020
BIOSAMPLE
ASSAY
131 results
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total RNA-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
27
12
exocrine cell
39
pancreatic alpha cell
27
5
6
1
pancreatic beta cell
10
2
1
pancreatic acinar cell
1
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