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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
17
pCHi-C
17
total RNA-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA binding
29
DNA accessibility
17
Transcription
Date released
23
February, 2023
23
May, 2021
16
January, 2021
6
May, 2022
Available data
6
bam
6
fastq
6
txt
Organism
68
Homo sapiens
Biosample type
34
tissue
24
primary cell
5
cell line
5
in vitro differentiated cells
Organ
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
56
T1D
12
AMP
Genome assembly (visualization)
hg19
96
GRCh38
Lab
502
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
68
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
assay_slims!
DNA binding
assembly!
hg19
BIOSAMPLE
ASSAY
68 results
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snATAC-seq
pCHi-C
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
11
pancreas
4
1
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
in vitro differentiated cells
embryonic stem cell
5
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