Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
35
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA binding
115
Transcription
53
DNA accessibility
Date released
81
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
1
October, 2017
Available data
120
bam
104
bigWig
96
tsv
25
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
1
bed broadPeak
Organism
190
Homo sapiens
Biosample type
122
primary cell
53
tissue
10
in vitro differentiated cells
5
cell line
Organ
52
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
38
AMP
Genome assembly (visualization)
122
hg19
97
GRCh38
Lab
2253
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
190 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
30
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
See all biosamples
Download