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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
359
ATAC-seq
212
DNase-seq
19
snATAC-seq
5
FAIRE-seq
Assay category
1813
DNA binding
1584
Transcription
595
DNA accessibility
50
DNA methylation
26
3D chromatin structure
Date released
187
June, 2019
102
February, 2023
100
May, 2020
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
May, 2022
16
January, 2021
14
September, 2018
11
August, 2017
10
August, 2021
10
November, 2018
8
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
Available data
386
bed narrowPeak
370
bam
314
bigWig
241
bigBed narrowPeak
208
bed bed3+
206
bed broadPeak
206
bigBed broadPeak
45
fastq
14
tsv
12
bed bed3
4
bed bedgraph
1
tar
Organism
595
Homo sapiens
Biosample type
335
tissue
191
primary cell
38
in vitro differentiated cells
31
cell line
Organ
101
pancreas
82
kidney
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
34
musculature of body
32
connective tissue
32
eye
18
ureter
12
bone element
12
skeleton
9
blood
9
bodily fluid
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
566
AMP
29
T1D
Genome assembly (visualization)
406
hg19
353
GRCh38
Lab
561
AMP-T2D consortium
81
Katalin Susztak, Upenn
37
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
1
audit script error
1
inconsistent replicate
month_released!
May, 2022
BIOSAMPLE
ASSAY
595 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
45
1
7
1
coronary artery
36
2
heart
18
retina
15
3
muscle of arm
17
+ See 59 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
+ See 57 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
embryonic stem cell
5
+ See 4 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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