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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
85
single cell RNA-seq
Assay category
292
Transcription
154
DNA binding
149
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
81
February, 2023
59
May, 2021
56
September, 2020
45
May, 2020
39
May, 2022
12
February, 2021
Available data
132
fastq
102
bam
98
bigWig
96
tsv
52
zippedFastqFolder
6
txt
2
bed bed3+
Organism
292
Homo sapiens
Biosample type
275
primary cell
12
tissue
5
in vitro differentiated cells
Organ
65
pancreas
53
epithelium
Project
177
HPAP
101
T1D
14
AMP
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
1476
AMP-T2D consortium
177
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
292 results
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total RNA-seq
single cell RNA-seq
primary cell
Langerhans cell
85
monocyte
53
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
+ See 24 more…
tissue
islet of Langerhans
11
pancreas
1
in vitro differentiated cells
embryonic stem cell
5
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