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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
125
total RNA-seq
35
ATAC-seq
18
snATAC-seq
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
125
Transcription
53
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Date released
81
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
18
August, 2021
16
January, 2021
2
March, 2019
Available data
120
bam
106
tsv
103
bigWig
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
209
Homo sapiens
Biosample type
122
primary cell
56
tissue
21
cell line
10
in vitro differentiated cells
Organ
55
pancreas
13
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
57
AMP
Genome assembly (visualization)
124
hg19
97
GRCh38
Lab
2253
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
209 results
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Clear Filters
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
12
30
6
2
pancreas
1
4
thymus
1
cell line
HepG2
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
embryonic stem cell
5
5
See all biosamples
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